Dresden 2006 – scientific programme

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AKB: Biologische Physik

AKB 19: Proteins

AKB 19.3: Talk

Wednesday, March 29, 2006, 16:30–16:45, ZEU 260

Protein structure comparison based on a vectorial structure representation — •Florian Teichert and Markus Porto — Institut für Festkörperphysik, Technische Universität Darmstadt, Hochschulstr. 8, 64289 Darmstadt, Germany

A vectorial structure representation has recently been proposed as an equivalent description of globular protein folds. We develop suitable similarity measures for this vectorial structure representation, incoorporating the proper treatment of gaps, based on which we divise a scheme to align protein structures which is conceptually different from existing schemes.

[1]~F.~Teichert and M.~Porto (in preparation)