Hannover 2010 – scientific programme

Parts | Days | Selection | Search | Downloads | Help

MO: Fachverband Molekülphysik

MO 17: Biomolecules

MO 17.10: Talk

Wednesday, March 10, 2010, 18:45–19:00, F 142

(Un)folding polyalanines: probing high-temperature stability from first principles — •Mariana Rossi, Volker Blum, Alex Tkatchenko, and Matthias Scheffler — Fritz-Haber-Institut der Max-Planck-Gesellschaft, D-14195 Berlin

Peptides in vacuo offer a unique, well-defined testbed to match experiments directly against first-principles approaches that predict the intramolecular interactions that govern peptide and protein folding. In this respect, the polyalanine-based peptide Ac-Ala₁₅-LysH⁺ is particularly interesting, as it is experimentally known to form helices in vacuo, with stable secondary structure up to ∼750 K [1]. Room-temperature folding and unfolding timescales are usually not accessible by direct first-principles simulations, but this high T scale allows a rare ab initio view. We here use van der Waals (vdW) corrected [2] density functional theory in the PBE generalized gradient approximation as implemented in the all-electron code FHI-aims [3] to show by Born-Oppenheimer ab initio molecular dynamics that Ac-Ala₁₅-LysH⁺ indeed unfolds rapidly (within a few ps) at T=800 K and 1000 K, but not at 500 K. We show that the structural stability of the α helix at 500 K is critically linked to a correct vdW treatment, and an interplay of the designed LysH⁺ ionic termination and vdW is essential for the observed helical secondary structure. [1] M. Kohtani et al., JACS 126, 7420 (2004). [2]A. Tkatchenko, M. Scheffler, PRL 102, 073005 (2009). [3] V. Blum et al., Comp. Phys. Comm. 180, 2175 (2009).