Regensburg 2025 – scientific programme

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BP: Fachverband Biologische Physik

BP 29: Focus Session: Innovations in Research Software Engineering (joint session BP/DY)

Thursday, March 20, 2025, 15:00–18:00, H44

Research software engineering (RSE) is an emerging field in science, with practitioners spanning a continuous spectrum from "researchers who code" to "software engineers developing for science". In Germany, a growing movement supported by deRSE e.V. is gaining recognition, and more institutions are acknowledging the increasing demand across various disciplines. This focus session will provide a platform to highlight recent advances in applications, tooling, and software in the fields of biophysics, dynamics, and statistical physics, as well as developments in the recognition and proliferation of RSE as a profession within our field and academia in general.

Organized by Simon Christ and Sophia Rudorf (Hannover).

	15:00	BP 29.1	Invited Talk: Community-driven software and data training for computational biology — •Toby Hodges
	15:30	BP 29.2	Python-based interface to micromagnetic simulation software: Ubermag — •Hans Fangohr, Martin Lang, Samuel J.R. Holt, Swapneel Amit Pathak, Kauser Zulfiqar, and Marijan Beg
	15:45	BP 29.3	OCTOPOS.jl: A Julia-based tool for synonymous codon optimization — Simon Christ, Jan-Hendrik Trösemeier, and •Sophia Rudorf
	16:00	BP 29.4	Invert pattern forming systems with BayesFlow to bridge the gap from simulation to experimental observation — •Hans Olischläger
	16:15	BP 29.5	FAIR Data Management for Soft Matter Simulations using NOMAD — •Bernadette Mohr, Esma Boydas, Nathan Daelman, José M. Pizarro, Tristan Bereau, Claudia Draxl, Luca M. Ghiringhelli, Martin Girard, Denis Usvyat, Roser Valentí, Silvana Botti, and Joseph F. Rudzinski
	16:30	BP 29.6	Estimation of kinetic rates by constrained optimization — •Federico Marotta, Maria Zimmermann-Kogadeeva, Peer Bork, Julia Mahamid, and Sophia Rudorf
	16:45	BP 29.7	Software provisioning for HPC and RSE — •Martin Lang, Henning Glawe, Jehferson Mello, and Hans Fangohr
	17:00	BP 29.8	Small scale Research Software Engineering — •Simon Christ
	17:15	BP 29.9	Estimation of pKa values in membrane bound proteins — •Jesse Jones, Nereu Montserrat i Busquets, Ana Gamiz Hernandez, Ville Kaila, and Maria Andrea Mroginski
	17:30	BP 29.10	The teachingRSE project - Towards a professionalization of RSE education. — •Florian Goth and Simon Christ
	17:45	BP 29.11	Python-Based Analysis Pipeline for the Quantification of Mechanics in Neural Organoids — •Michael Frischmann, Elijah R. Shelton, Achim T. Brinkop, and Friedhelm Serwane